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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037712 through 18771 annotations produced 1 hits



(CG16789):

Annotation Number : CG16789
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037712
Gbrowse : chr3R:5391953-5394918 (+) // 100.0 //
Probeset : 1629421_at
Accessions : protein= NP_649910;, nucleotide= NM_141653;
Interpro : 0005524 // ATP binding // inferred from electronic annotation
FlyMine data for FBgn0037712.
BDGP gene expression has embryonic in situ data for CG16789: 15 pix of staining in 4 body parts.
Homophila reports that CG16789 is a close match (6e-13) to human gene SPAST;SPG4 (NP_955468), a gene associated with Spastic paraplegia-4, 182601 (3).
VDRC has 3 RNAi stocks for FBgn0037712 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 24 of 4 8.00Up
Head15 ± 12 of 4 2.40Up
Eye16 ± 14 of 4 2.66Up
Thoracicoabdominal ganglion58 ± 14 of 4 9.50Up
Salivary gland21 ± 30 of 4 3.46Up
Crop14 ± 12 of 4 2.40Up
Midgut8 ± 30 of 4 1.40None
Tubule13 ± 01 of 4 2.10Up
Hindgut11 ± 21 of 4 1.90None
Heart12 ± 11 of 4 1.95Up
Fat body11 ± 52 of 4 1.86None
Ovary3 ± 10 of 4 0.60None
Testis9 ± 20 of 4 1.60None
Male accessory glands10 ± 10 of 4 1.70Up
Virgin spermatheca8 ± 11 of 4 1.41None
Mated spermatheca10 ± 00 of 4 1.65Up
Adult carcass14 ± 30 of 4 2.40None
Larval CNS22 ± 14 of 4 3.71Up
Larval Salivary gland6 ± 30 of 4 1.11None
Larval midgut10 ± 20 of 4 1.75None
Larval tubule22 ± 23 of 4 3.60Up
Larval hindgut4 ± 11 of 4 0.71None
Larval fat body20 ± 30 of 4 3.30Up
Larval trachea6 ± 21 of 4 1.08None
Larval carcass1 ± 00 of 4 0.30Down
S2 cells (growing)12 ± 02 of 4 1.98Up
Whole fly6 ± 10 of 4

Looking for FBgn0037712. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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