FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037713 through 18771 annotations produced 1 hits

(CG16790):

Annotation Number : CG16790
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037713
Gbrowse : chr3R:5394972-5395862 (-) // 100.0 //
Probeset : 1639975_at
Accessions : protein= NP_649911;, nucleotide= NM_141654;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0037713.
BioGrid reports that CG16790 interacts with CG5519 .
VDRC has 2 RNAi stocks for FBgn0037713 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	28 ± 0	4 of 4	1.20	None
Head	27 ± 1	4 of 4	1.10	None
Eye	22 ± 1	4 of 4	0.91	None
Thoracicoabdominal ganglion	32 ± 2	4 of 4	1.30	None
Salivary gland	42 ± 3	2 of 4	1.74	Up
Crop	31 ± 1	4 of 4	1.30	Up
Midgut	28 ± 3	4 of 4	1.20	None
Tubule	124 ± 6	4 of 4	5.10	Up
Hindgut	26 ± 4	4 of 4	1.10	None
Heart	26 ± 1	4 of 4	1.10	None
Fat body	38 ± 9	4 of 4	1.58	Up
Ovary	29 ± 1	4 of 4	1.20	Up
Testis	4 ± 1	0 of 4	0.20	Down
Male accessory glands	24 ± 1	4 of 4	1.00	None
Virgin spermatheca	41 ± 4	4 of 4	1.69	Up
Mated spermatheca	18 ± 1	4 of 4	0.77	Down
Adult carcass	36 ± 2	3 of 4	1.50	Up
Larval CNS	31 ± 3	4 of 4	1.29	Up
Larval Salivary gland	32 ± 1	4 of 4	1.33	Up
Larval midgut	28 ± 2	4 of 4	1.16	None
Larval tubule	32 ± 2	4 of 4	1.30	Up
Larval hindgut	26 ± 0	3 of 4	1.09	None
Larval fat body	22 ± 5	3 of 4	0.90	None
Larval trachea	34 ± 0	4 of 4	1.40	Up
Larval carcass	19 ± 1	4 of 4	0.79	None
S2 cells (growing)	24 ± 3	4 of 4	1.03	None
Whole fly	24 ± 1	4 of 4

Looking for FBgn0037713. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720