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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037716 through 18771 annotations produced 1 hits



(CG8273):

Annotation Number : CG8273
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037716
Gbrowse : chr3R:5403679-5406585 (+) // 100.0 //
Probeset : 1624277_at
Accessions : protein= NP_649914;, nucleotide= NM_141657;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elect
FlyMine data for FBgn0037716.
TRiP has 1 RNAi stocks for FBgn0037716 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037716 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 34 of 4 0.90None
Head33 ± 24 of 4 0.50Down
Eye30 ± 24 of 4 0.42Down
Thoracicoabdominal ganglion58 ± 24 of 4 0.80None
Salivary gland56 ± 44 of 4 0.77Down
Crop39 ± 04 of 4 0.50Down
Midgut33 ± 23 of 4 0.50Down
Tubule29 ± 13 of 4 0.40Down
Hindgut45 ± 24 of 4 0.60Down
Heart25 ± 14 of 4 0.35Down
Fat body39 ± 44 of 4 0.55Down
Ovary182 ± 54 of 4 2.50Up
Testis97 ± 34 of 4 1.30Up
Male accessory glands46 ± 11 of 4 0.60Down
Virgin spermatheca43 ± 14 of 4 0.60Down
Mated spermatheca50 ± 24 of 4 0.70Down
Adult carcass60 ± 43 of 4 0.80None
Larval CNS73 ± 54 of 4 1.01None
Larval Salivary gland81 ± 54 of 4 1.12None
Larval midgut33 ± 10 of 4 0.46Down
Larval tubule39 ± 34 of 4 0.50Down
Larval hindgut42 ± 24 of 4 0.59Down
Larval fat body41 ± 34 of 4 0.60Down
Larval trachea23 ± 74 of 4 0.33Down
Larval carcass41 ± 10 of 4 0.57Down
S2 cells (growing)69 ± 24 of 4 0.96None
Whole fly72 ± 54 of 4

Looking for FBgn0037716. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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