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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037719 through 18771 annotations produced 1 hits



bocksbeutel (bocksbeutel):

Annotation Number : CG9424
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037719
Gbrowse : chr3R:5415191-5416709 (-) // 100.0 //
Probeset : 1639882_at
Accessions : protein= NP_001014611; /// NP_649917;, nucleotide= NM_001014611; /// NM_141660;
Pathway : 0005635 // nuclear envelope // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037719.
TRiP has 1 RNAi stocks for FBgn0037719 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037719 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 ± 34 of 4 0.80Down
Head86 ± 34 of 4 0.80Down
Eye94 ± 44 of 4 0.84Down
Thoracicoabdominal ganglion89 ± 54 of 4 0.80Down
Salivary gland90 ± 64 of 4 0.81Down
Crop149 ± 64 of 4 1.30Up
Midgut114 ± 64 of 4 1.00None
Tubule89 ± 24 of 4 0.80Down
Hindgut166 ± 54 of 4 1.50Up
Heart137 ± 34 of 4 1.23Up
Fat body129 ± 44 of 4 1.16Up
Ovary196 ± 24 of 4 1.80Up
Testis64 ± 34 of 4 0.60Down
Male accessory glands135 ± 74 of 4 1.20Up
Virgin spermatheca76 ± 14 of 4 0.69Down
Mated spermatheca95 ± 64 of 4 0.85None
Adult carcass104 ± 34 of 4 0.90None
Larval CNS124 ± 134 of 4 1.11None
Larval Salivary gland170 ± 44 of 4 1.53Up
Larval midgut162 ± 94 of 4 1.45Up
Larval tubule224 ± 54 of 4 2.00Up
Larval hindgut218 ± 124 of 4 1.96Up
Larval fat body111 ± 54 of 4 1.00None
Larval trachea154 ± 74 of 4 1.39Up
Larval carcass144 ± 74 of 4 1.30Up
S2 cells (growing)129 ± 34 of 4 1.16Up
Whole fly111 ± 54 of 4

Looking for FBgn0037719. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime