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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037721 through 18771 annotations produced 1 hits



(CG9427):

Annotation Number : CG9427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037721
Gbrowse : chr3R:5450874-5452187 (-) // 100.0 //
Probeset : 1627645_at
Accessions : protein= NP_649919;, nucleotide= NM_141662;
FlyMine data for FBgn0037721.
BDGP gene expression has embryonic in situ data for CG9427: 10 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0037721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 10 of 4 0.20Down
Head179 84 of 4 3.10Up
Eye750 374 of 412.94Up
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland54 102 of 4 0.93None
Crop204 144 of 4 3.50Up
Midgut3 10 of 4 0.10Down
Tubule49 71 of 4 0.90None
Hindgut1073 374 of 418.50Up
Heart1 00 of 4 0.02Down
Fat body3 10 of 4 0.05Down
Ovary4 10 of 4 0.10Down
Testis39 24 of 4 0.70Down
Male accessory glands2288 1694 of 439.40Up
Virgin spermatheca15 21 of 4 0.27Down
Mated spermatheca16 20 of 4 0.28Down
Adult carcass17 20 of 4 0.30Down
Larval CNS6 20 of 4 0.11Down
Larval Salivary gland30 11 of 4 0.53Down
Larval midgut7 20 of 4 0.12Down
Larval tubule115 54 of 4 2.00Up
Larval hindgut601 124 of 410.36Up
Larval fat body3 00 of 4 0.10Down
Larval trachea372 264 of 4 6.43Up
Larval carcass325 204 of 4 5.61Up
S2 cells (growing)4 10 of 4 0.08Down
Whole fly58 63 of 4

Looking for FBgn0037721. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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