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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037722 through 18771 annotations produced 1 hits



(CG8319):

Annotation Number : CG8319
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037722
Gbrowse : chr3R:5453119-5454332 (+) // 100.0 //
Probeset : 1638886_at
Accessions : protein= NP_649920;, nucleotide= NM_141663;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037722.
Homophila reports that CG8319 is a close match (4e-11) to human gene BCD1;COPEB;KLF6;ZF9 (NP_001291), a gene associated with Gastric cancer, somatic, 137215 (3);Prostate cancer, somatic, 176807 (3).
VDRC has 2 RNAi stocks for FBgn0037722 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 24 of 4 0.50Down
Head24 14 of 4 0.40Down
Eye33 24 of 4 0.50Down
Thoracicoabdominal ganglion26 34 of 4 0.40Down
Salivary gland17 30 of 4 0.25Down
Crop35 04 of 4 0.50Down
Midgut14 00 of 4 0.20Down
Tubule16 22 of 4 0.20Down
Hindgut16 14 of 4 0.20Down
Heart21 24 of 4 0.32Down
Fat body36 34 of 4 0.54Down
Ovary185 14 of 4 2.80Up
Testis34 24 of 4 0.50Down
Male accessory glands49 24 of 4 0.70Down
Virgin spermatheca39 44 of 4 0.58Down
Mated spermatheca41 24 of 4 0.62Down
Adult carcass27 72 of 4 0.40Down
Larval CNS47 34 of 4 0.71Down
Larval Salivary gland18 23 of 4 0.27Down
Larval midgut19 33 of 4 0.28Down
Larval tubule28 34 of 4 0.40Down
Larval hindgut28 34 of 4 0.42Down
Larval fat body98 94 of 4 1.50Up
Larval trachea50 54 of 4 0.75Down
Larval carcass25 24 of 4 0.38Down
S2 cells (growing)55 14 of 4 0.82Down
Whole fly67 14 of 4

Looking for FBgn0037722. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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