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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037723 through 18771 annotations produced 1 hits



Spermidine Synthase (SpdS):

Annotation Number : CG8327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037723
Gbrowse : chr3R:5457380-5459394 (+) // 100.0 //
Probeset : 1630830_a_at
Accessions : protein= NP_649921; /// NP_731384;, nucleotide= NM_141664; /// NM_169298;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004766 // spermidine synthase activity // infe
FlyMine data for FBgn0037723.
BDGP gene expression has embryonic in situ data for CG8327: 13 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0037723 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 24 of 4 0.50Down
Head115 114 of 4 1.50Up
Eye160 84 of 4 2.07Up
Thoracicoabdominal ganglion37 14 of 4 0.50Down
Salivary gland27 52 of 4 0.35Down
Crop67 34 of 4 0.90None
Midgut14 14 of 4 0.20Down
Tubule104 94 of 4 1.40Up
Hindgut19 04 of 4 0.30Down
Heart48 14 of 4 0.63Down
Fat body123 194 of 4 1.59Up
Ovary154 34 of 4 2.00Up
Testis6 03 of 4 0.10Down
Male accessory glands17 24 of 4 0.20Down
Virgin spermatheca352 264 of 4 4.54Up
Mated spermatheca348 324 of 4 4.49Up
Adult carcass48 54 of 4 0.60Down
Larval CNS75 44 of 4 0.98None
Larval Salivary gland59 64 of 4 0.76None
Larval midgut19 14 of 4 0.24Down
Larval tubule174 104 of 4 2.20Up
Larval hindgut36 34 of 4 0.47Down
Larval fat body105 184 of 4 1.40None
Larval trachea65 174 of 4 0.84None
Larval carcass56 94 of 4 0.72None
S2 cells (growing)28 14 of 4 0.37Down
Whole fly77 74 of 4

Looking for FBgn0037723. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime