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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037724 through 18771 annotations produced 1 hits



Frost /// Sex combs on midleg (Fst /// Scm):

Annotation Number : CG9434
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037724
Gbrowse : chr3R:5470850-5471874 (-) // 100.0 //
Probeset : 1630600_at
Accessions : protein= NP_524294;, nucleotide= NM_079570;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0035102 //
Interpro : 0003704 // specific RNA polymerase II transcription factor activity // non-traceable author statement /// 0005515 // pro
FlyMine data for FBgn0037724.
TRiP has 1 RNAi stocks for FBgn0037724 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037724 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.00None
Head8 20 of 4 0.10None
Eye2 00 of 4 0.02None
Thoracicoabdominal ganglion8 20 of 4 0.10None
Salivary gland6 20 of 4 0.04None
Crop6 20 of 4 0.00None
Midgut588 454 of 4 4.10Up
Tubule1522 9024 of 410.50None
Hindgut82 74 of 4 0.60None
Heart5 20 of 4 0.04None
Fat body185 3261 of 4 1.28None
Ovary4 10 of 4 0.00None
Testis4 10 of 4 0.00None
Male accessory glands10 20 of 4 0.10None
Virgin spermatheca16 20 of 4 0.11None
Mated spermatheca13 21 of 4 0.10None
Adult carcass14 40 of 4 0.10None
Larval CNS5 20 of 4 0.04None
Larval Salivary gland7 10 of 4 0.05None
Larval midgut3217 844 of 422.26Up
Larval tubule7118 2034 of 449.30Up
Larval hindgut2671 2304 of 418.49Up
Larval fat body37 132 of 4 0.30None
Larval trachea4 10 of 4 0.03None
Larval carcass10 20 of 4 0.08None
S2 cells (growing)7 10 of 4 0.05None
Whole fly144 964 of 4

Looking for FBgn0037724. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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