FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037727 through 18771 annotations produced 1 hits

(CG8358):

Annotation Number : CG8358
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037727
Gbrowse : chr3R:5501244-5503501 (+) // 100.0 //
Probeset : 1626377_at
Accessions : protein= NP_649924;, nucleotide= NM_141667;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0037727.
BDGP gene expression has embryonic in situ data for CG8358: 4 pix of staining in 1 body parts.
Homophila reports that CG8358 is a close match (7e-22) to human gene KEL (NP_000411), a gene associated with [Blood group, Kell] (3).
VDRC has 1 RNAi stocks for FBgn0037727 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.10	Down
Head	71 ± 8	4 of 4	3.40	Up
Eye	31 ± 4	4 of 4	1.52	None
Thoracicoabdominal ganglion	4 ± 2	0 of 4	0.20	Down
Salivary gland	4 ± 3	0 of 4	0.23	Down
Crop	5 ± 1	0 of 4	0.30	Down
Midgut	58 ± 0	4 of 4	2.80	Up
Tubule	12 ± 1	2 of 4	0.60	Down
Hindgut	10 ± 0	0 of 4	0.50	Down
Heart	67 ± 7	4 of 4	3.27	Up
Fat body	193 ± 28	4 of 4	9.37	Up
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	5 ± 1	0 of 4	0.20	Down
Male accessory glands	8 ± 3	0 of 4	0.40	Down
Virgin spermatheca	219 ± 16	4 of 4	10.63	Up
Mated spermatheca	164 ± 4	4 of 4	7.97	Up
Adult carcass	88 ± 7	4 of 4	4.30	Up
Larval CNS	1 ± 1	0 of 4	0.09	Down
Larval Salivary gland	3 ± 0	0 of 4	0.16	Down
Larval midgut	9 ± 2	0 of 4	0.44	Down
Larval tubule	3 ± 1	0 of 4	0.20	Down
Larval hindgut	2 ± 0	0 of 4	0.13	Down
Larval fat body	13 ± 3	0 of 4	0.70	None
Larval trachea	2 ± 1	0 of 4	0.12	Down
Larval carcass	2 ± 1	0 of 4	0.14	Down
S2 cells (growing)	14 ± 0	1 of 4	0.70	None
Whole fly	20 ± 2	4 of 4

Looking for FBgn0037727. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720