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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037730 through 18771 annotations produced 1 hits



(CG9444):

Annotation Number : CG9444
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037730
Gbrowse : chr3R:5507243-5509745 (-) // 100.0 //
Probeset : 1640310_at
Accessions : protein= NP_649927;, nucleotide= NM_141670;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005427 // proton-dependent oligopeptide seco
FlyMine data for FBgn0037730.
BDGP gene expression has embryonic in situ data for CG9444: 14 pix of staining in 6 body parts.
VDRC has 3 RNAi stocks for FBgn0037730 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20None
Head33 ± 14 of 4 2.70Up
Eye126 ± 54 of 410.23Up
Thoracicoabdominal ganglion4 ± 10 of 4 0.40Down
Salivary gland29 ± 40 of 4 2.37Up
Crop4 ± 10 of 4 0.30Down
Midgut8 ± 10 of 4 0.60None
Tubule398 ± 154 of 432.10Up
Hindgut7 ± 21 of 4 0.60None
Heart6 ± 12 of 4 0.51None
Fat body18 ± 23 of 4 1.50None
Ovary3 ± 10 of 4 0.30Down
Testis7 ± 00 of 4 0.60None
Male accessory glands7 ± 30 of 4 0.60None
Virgin spermatheca15 ± 00 of 4 1.26None
Mated spermatheca12 ± 20 of 4 1.03None
Adult carcass20 ± 10 of 4 1.70Up
Larval CNS4 ± 20 of 4 0.33Down
Larval Salivary gland20 ± 13 of 4 1.61None
Larval midgut9 ± 40 of 4 0.75None
Larval tubule404 ± 124 of 432.60Up
Larval hindgut18 ± 33 of 4 1.51None
Larval fat body2146 ± 2494 of 4173.10Up
Larval trachea2 ± 10 of 4 0.18Down
Larval carcass7 ± 30 of 4 0.62None
S2 cells (growing)5 ± 11 of 4 0.46None
Whole fly12 ± 23 of 4

Looking for FBgn0037730. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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