Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037731 through 18771 annotations produced 2 hits



/// (CG18542 /// CG32939):

Annotation Number : CG18542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037731 /// FBgn0052939
Gbrowse : chr3R:5518803-5520183 (+) // 99.68 // /// chr3R:5511483-5512863 (+) // 99.68 //
Probeset : 1640746_at
Accessions : protein= NP_649928; /// NP_788618;, nucleotide= NM_141671; /// NM_176441;
FlyMine data for FBgn0037731 /// FBgn0052939.
BioGrid reports that CG18542 interacts with CG9042 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain758 ± 334 of 4 3.60Up
Head385 ± 294 of 4 1.80Up
Eye320 ± 174 of 4 1.50Up
Thoracicoabdominal ganglion934 ± 384 of 4 4.40Up
Salivary gland589 ± 194 of 4 2.77Up
Crop247 ± 134 of 4 1.20None
Midgut75 ± 34 of 4 0.40Down
Tubule290 ± 44 of 4 1.40Up
Hindgut286 ± 34 of 4 1.30None
Heart279 ± 154 of 4 1.31None
Fat body380 ± 644 of 4 1.78Up
Ovary389 ± 74 of 4 1.80Up
Testis53 ± 44 of 4 0.30Down
Male accessory glands206 ± 74 of 4 1.00None
Virgin spermatheca540 ± 394 of 4 2.53Up
Mated spermatheca541 ± 124 of 4 2.54Up
Adult carcass239 ± 194 of 4 1.10None
Larval CNS357 ± 394 of 4 1.68Up
Larval Salivary gland371 ± 114 of 4 1.74Up
Larval midgut64 ± 34 of 4 0.30Down
Larval tubule210 ± 84 of 4 1.00None
Larval hindgut347 ± 144 of 4 1.63Up
Larval fat body189 ± 134 of 4 0.90None
Larval trachea259 ± 124 of 4 1.22None
Larval carcass189 ± 144 of 4 0.89None
S2 cells (growing)318 ± 104 of 4 1.49Up
Whole fly213 ± 234 of 4



/// (CG18542 /// CG32939):

Annotation Number : CG32939
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037731 /// FBgn0052939
Gbrowse : chr3R:5518890-5519759 (+) // 100.0 // /// chr3R:5511570-5512439 (+) // 100.0 //
Probeset : 1625860_s_at
Accessions : protein= NP_649928; /// NP_788618;, nucleotide= NM_141671; /// NM_176441;
FlyMine data for FBgn0037731 /// FBgn0052939.
BioGrid reports that CG32939 interacts with CG9042 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain422 ± 84 of 4 5.60Up
Head161 ± 94 of 4 2.10Up
Eye192 ± 104 of 4 2.55Up
Thoracicoabdominal ganglion364 ± 54 of 4 4.80Up
Salivary gland213 ± 84 of 4 2.81Up
Crop93 ± 84 of 4 1.20None
Midgut33 ± 34 of 4 0.40Down
Tubule109 ± 34 of 4 1.40Up
Hindgut127 ± 14 of 4 1.70Up
Heart104 ± 114 of 4 1.38None
Fat body114 ± 274 of 4 1.52None
Ovary145 ± 54 of 4 1.90Up
Testis22 ± 24 of 4 0.30Down
Male accessory glands68 ± 34 of 4 0.90None
Virgin spermatheca112 ± 64 of 4 1.49Up
Mated spermatheca100 ± 84 of 4 1.33None
Adult carcass101 ± 74 of 4 1.30Up
Larval CNS136 ± 294 of 4 1.80Up
Larval Salivary gland136 ± 154 of 4 1.80Up
Larval midgut21 ± 14 of 4 0.29Down
Larval tubule91 ± 44 of 4 1.20Up
Larval hindgut103 ± 64 of 4 1.36Up
Larval fat body58 ± 44 of 4 0.80Down
Larval trachea146 ± 124 of 4 1.94Up
Larval carcass62 ± 64 of 4 0.82None
S2 cells (growing)253 ± 94 of 4 3.35Up
Whole fly75 ± 24 of 4

Looking for FBgn0037731. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime