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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037734 through 18771 annotations produced 1 hits



Trabid (trbd):

Annotation Number : CG9448
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037734
Gbrowse : chr3R:5531511-5536754 (-) // 100.0 //
Probeset : 1625367_at
Accessions : protein= NP_649931;, nucleotide= NM_141674;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from sequence or structural similarity /// 0005515 // protein bi
FlyMine data for FBgn0037734.
BDGP gene expression has embryonic in situ data for CG9448: 15 pix of staining in 3 body parts.
VDRC has 1 RNAi stocks for FBgn0037734 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain167 ± 124 of 4 2.00Up
Head100 ± 54 of 4 1.20None
Eye98 ± 34 of 4 1.15None
Thoracicoabdominal ganglion119 ± 34 of 4 1.40Up
Salivary gland66 ± 64 of 4 0.78None
Crop68 ± 34 of 4 0.80None
Midgut32 ± 34 of 4 0.40Down
Tubule62 ± 04 of 4 0.70Down
Hindgut51 ± 44 of 4 0.60Down
Heart77 ± 64 of 4 0.90None
Fat body147 ± 104 of 4 1.72Up
Ovary117 ± 44 of 4 1.40Up
Testis37 ± 44 of 4 0.40Down
Male accessory glands57 ± 54 of 4 0.70None
Virgin spermatheca77 ± 54 of 4 0.91None
Mated spermatheca75 ± 44 of 4 0.88None
Adult carcass187 ± 74 of 4 2.20Up
Larval CNS88 ± 124 of 4 1.04None
Larval Salivary gland59 ± 54 of 4 0.70None
Larval midgut53 ± 34 of 4 0.62Down
Larval tubule77 ± 44 of 4 0.90None
Larval hindgut61 ± 24 of 4 0.71None
Larval fat body60 ± 34 of 4 0.70None
Larval trachea35 ± 44 of 4 0.41Down
Larval carcass63 ± 44 of 4 0.74None
S2 cells (growing)51 ± 44 of 4 0.60Down
Whole fly85 ± 104 of 4

Looking for FBgn0037734. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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