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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037737 through 18771 annotations produced 1 hits



Pinin (Pnn):

Annotation Number : CG8383
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037737
Gbrowse : chr3R:5566643-5567881 (+) // 100.0 //
Probeset : 1641196_at
Accessions : protein= NP_001097727; /// NP_649934;, nucleotide= NM_001104257; /// NM_141677;
Pathway : via spliceosome // inferred by curator /// 0006396 // RNA processing // non-traceable author statement"
Interpro : 0030057 // desmosome // inferred from sequence or structural similarity /// 0071011 // precatalytic spliceosome // infer
FlyMine data for FBgn0037737.
BDGP gene expression has embryonic in situ data for Pnn: 12 pix of staining in 6 body parts.
BioGrid reports that CG8383 interacts with CG9636 .
VDRC has 2 RNAi stocks for FBgn0037737 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 54 of 4 1.10None
Head60 34 of 4 0.50Down
Eye111 44 of 4 0.96None
Thoracicoabdominal ganglion73 64 of 4 0.60Down
Salivary gland27 14 of 4 0.24Down
Crop61 44 of 4 0.50Down
Midgut31 24 of 4 0.30Down
Tubule51 24 of 4 0.40Down
Hindgut32 14 of 4 0.30Down
Heart36 24 of 4 0.31Down
Fat body44 64 of 4 0.39Down
Ovary325 94 of 4 2.80Up
Testis21 14 of 4 0.20Down
Male accessory glands29 34 of 4 0.30Down
Virgin spermatheca74 44 of 4 0.64Down
Mated spermatheca78 34 of 4 0.68Down
Adult carcass23 14 of 4 0.20Down
Larval CNS172 184 of 4 1.49Up
Larval Salivary gland49 34 of 4 0.43Down
Larval midgut33 34 of 4 0.29Down
Larval tubule49 64 of 4 0.40Down
Larval hindgut42 24 of 4 0.37Down
Larval fat body58 44 of 4 0.50Down
Larval trachea47 34 of 4 0.41Down
Larval carcass42 14 of 4 0.37Down
S2 cells (growing)66 14 of 4 0.58Down
Whole fly115 114 of 4

Looking for FBgn0037737. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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