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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037739 through 18771 annotations produced 1 hits



(CG12948):

Annotation Number : CG12948
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037739
Gbrowse : chr3R:5571888-5573254 (-) // 100.0 //
Probeset : 1624948_at
Accessions : protein= NP_649936;, nucleotide= NM_141679;
FlyMine data for FBgn0037739.
VDRC has 3 RNAi stocks for FBgn0037739 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 ± 14 of 4 0.60Down
Head66 ± 54 of 4 0.50Down
Eye63 ± 14 of 4 0.48Down
Thoracicoabdominal ganglion76 ± 24 of 4 0.60Down
Salivary gland82 ± 64 of 4 0.63Down
Crop105 ± 64 of 4 0.80Down
Midgut21 ± 34 of 4 0.20Down
Tubule37 ± 34 of 4 0.30Down
Hindgut65 ± 34 of 4 0.50Down
Heart36 ± 14 of 4 0.28Down
Fat body40 ± 34 of 4 0.31Down
Ovary278 ± 74 of 4 2.10Up
Testis37 ± 44 of 4 0.30Down
Male accessory glands73 ± 54 of 4 0.60Down
Virgin spermatheca67 ± 34 of 4 0.51Down
Mated spermatheca68 ± 34 of 4 0.52Down
Adult carcass72 ± 14 of 4 0.60Down
Larval CNS217 ± 154 of 4 1.66Up
Larval Salivary gland129 ± 74 of 4 0.99None
Larval midgut25 ± 52 of 4 0.20Down
Larval tubule32 ± 44 of 4 0.20Down
Larval hindgut84 ± 64 of 4 0.65Down
Larval fat body60 ± 74 of 4 0.50Down
Larval trachea164 ± 154 of 4 1.25Up
Larval carcass145 ± 64 of 4 1.11None
S2 cells (growing)114 ± 64 of 4 0.87None
Whole fly131 ± 44 of 4

Looking for FBgn0037739. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime