FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037742 through 18771 annotations produced 1 hits

chr3R:5580454-5581921 (-) // 100.0 // (Rpt3R):

Annotation Number : CG9475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623904_a_at
Accessions : protein= , nucleotide= NP_649938;
Pathway : 0006508 // proteolysis // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus
Interpro : "0000502 // proteasome complex // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic an
FlyMine data for full length.
Homophila reports that CG9475 is a close match (2e-11) to human gene BCS1L;BJS;FLNMS;GRACILE;PTD (NP_004319), a gene associated with Bjornstad syndrome, 262000 (3);GRACILE syndrome, 603358 (3);Leigh syndrome, 256000 (3);Mitochondrial complex III deficiency, 124000 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.00	Down
Head	3 ± 1	0 of 4	0.10	Down
Eye	0 ± 0	0 of 4	0.02	Down
Thoracicoabdominal ganglion	18 ± 1	4 of 4	0.40	Down
Salivary gland	10 ± 2	0 of 4	0.19	Down
Crop	3 ± 2	0 of 4	0.10	Down
Midgut	2 ± 0	0 of 4	0.10	Down
Tubule	2 ± 0	0 of 4	0.10	Down
Hindgut	10 ± 1	1 of 4	0.20	Down
Heart	2 ± 1	0 of 4	0.05	Down
Fat body	3 ± 2	0 of 4	0.06	Down
Ovary	5 ± 0	1 of 4	0.10	Down
Testis	718 ± 24	4 of 4	13.60	Up
Male accessory glands	45 ± 4	4 of 4	0.90	None
Virgin spermatheca	5 ± 0	0 of 4	0.10	Down
Mated spermatheca	3 ± 1	0 of 4	0.06	Down
Adult carcass	5 ± 2	0 of 4	0.10	Down
Larval CNS	61 ± 8	4 of 4	1.17	None
Larval Salivary gland	9 ± 0	1 of 4	0.18	Down
Larval midgut	2 ± 1	0 of 4	0.05	Down
Larval tubule	5 ± 1	0 of 4	0.10	Down
Larval hindgut	3 ± 1	0 of 4	0.07	Down
Larval fat body	106 ± 38	4 of 4	2.00	None
Larval trachea	3 ± 3	0 of 4	0.07	Down
Larval carcass	6 ± 2	0 of 4	0.13	Down
S2 cells (growing)	47 ± 4	4 of 4	0.90	None
Whole fly	52 ± 4	4 of 4

Looking for FBgn0037742. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720