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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037744 through 18771 annotations produced 1 hits



(CG8417):

Annotation Number : CG8417
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037744
Gbrowse : chr3R:5585318-5586930 (+) // 100.0 //
Probeset : 1633934_at
Accessions : protein= NP_649940;, nucleotide= NM_141683;
Interpro : 0004476 // mannose-6-phosphate isomerase activity // inferred from sequence or structural similarity /// 0004476 // mann
FlyMine data for FBgn0037744.
BDGP gene expression has embryonic in situ data for CG8417: 12 pix of staining in 8 body parts.
Homophila reports that CG8417 is a close match (3e-73) to human gene MPI;PMI1 (NP_002426), a gene associated with Carbohydrate-deficient glycoprotein syndrome, type Ib, 602579 (3).
BioGrid reports that CG8417 interacts with CG8722 CG9089 CG9181 CG9659 CG8770 .
TRiP has 1 RNAi stocks for FBgn0037744 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037744 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain330 ± 94 of 4 1.00None
Head596 ± 194 of 4 1.80Up
Eye864 ± 304 of 4 2.56Up
Thoracicoabdominal ganglion369 ± 104 of 4 1.10None
Salivary gland1275 ± 434 of 4 3.77Up
Crop1121 ± 234 of 4 3.30Up
Midgut538 ± 234 of 4 1.60Up
Tubule1641 ± 1124 of 4 4.90Up
Hindgut1208 ± 154 of 4 3.60Up
Heart838 ± 584 of 4 2.48Up
Fat body1046 ± 844 of 4 3.10Up
Ovary190 ± 54 of 4 0.60Down
Testis575 ± 54 of 4 1.70Up
Male accessory glands465 ± 404 of 4 1.40Up
Virgin spermatheca875 ± 324 of 4 2.59Up
Mated spermatheca688 ± 544 of 4 2.04Up
Adult carcass856 ± 164 of 4 2.50Up
Larval CNS372 ± 504 of 4 1.10None
Larval Salivary gland680 ± 334 of 4 2.01Up
Larval midgut335 ± 284 of 4 0.99None
Larval tubule1199 ± 484 of 4 3.50Up
Larval hindgut376 ± 64 of 4 1.11None
Larval fat body799 ± 514 of 4 2.40Up
Larval trachea354 ± 214 of 4 1.05None
Larval carcass1055 ± 1024 of 4 3.12Up
S2 cells (growing)364 ± 104 of 4 1.08None
Whole fly338 ± 184 of 4

Looking for FBgn0037744. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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