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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037747 through 18771 annotations produced 1 hits



(CG8481):

Annotation Number : CG8481
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037747
Gbrowse : chr3R:5593572-5595749 (+) // 100.0 //
Probeset : 1632163_at
Accessions : protein= NP_001014612; /// NP_649942;, nucleotide= NM_001014612; /// NM_141685;
Interpro : 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0037747.
BioGrid reports that CG8481 interacts with CG9881 .
VDRC has 4 RNAi stocks for FBgn0037747 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain543 124 of 4 1.90Up
Head326 174 of 4 1.10None
Eye396 144 of 4 1.40Up
Thoracicoabdominal ganglion549 194 of 4 1.90Up
Salivary gland248 24 of 4 0.88Down
Crop356 144 of 4 1.30Up
Midgut248 54 of 4 0.90Down
Tubule289 174 of 4 1.00None
Hindgut271 64 of 4 1.00None
Heart182 44 of 4 0.64Down
Fat body83 34 of 4 0.29Down
Ovary310 24 of 4 1.10None
Testis109 34 of 4 0.40Down
Male accessory glands336 164 of 4 1.20Up
Virgin spermatheca178 94 of 4 0.63Down
Mated spermatheca161 104 of 4 0.57Down
Adult carcass335 254 of 4 1.20None
Larval CNS226 124 of 4 0.80Down
Larval Salivary gland249 144 of 4 0.88None
Larval midgut189 74 of 4 0.67Down
Larval tubule229 44 of 4 0.80Down
Larval hindgut285 134 of 4 1.00None
Larval fat body152 44 of 4 0.50Down
Larval trachea382 274 of 4 1.35Up
Larval carcass311 194 of 4 1.10None
S2 cells (growing)200 54 of 4 0.71Down
Whole fly284 104 of 4

Looking for FBgn0037747. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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