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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037751 through 18771 annotations produced 1 hits



matotopetli (topi):

Annotation Number : CG8484
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037751
Gbrowse : chr3R:5600842-5603665 (+) // 100.0 //
Probeset : 1639848_at
Accessions : protein= NP_649945;, nucleotide= NM_141688;
Pathway : DNA-dependent // non-traceable author statement /// 0007126 // meiosis // inferred from electronic annotation /// 00071
Interpro : 0000790 // nuclear chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic anno
FlyMine data for FBgn0037751.
BDGP gene expression has embryonic in situ data for CG8484: 4 pix of staining in 1 body parts.
Homophila reports that CG8484 is a close match (7e-11) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
BioGrid reports that CG8484 interacts with CG8508 .
VDRC has 2 RNAi stocks for FBgn0037751 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head2 00 of 4 0.20Down
Eye1 00 of 4 0.13Down
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland5 30 of 4 0.42None
Crop4 10 of 4 0.30Down
Midgut6 11 of 4 0.50Down
Tubule10 01 of 4 0.70Down
Hindgut3 00 of 4 0.20Down
Heart4 10 of 4 0.29Down
Fat body3 20 of 4 0.22Down
Ovary5 12 of 4 0.40Down
Testis187 64 of 413.20Up
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.11Down
Mated spermatheca2 00 of 4 0.15Down
Adult carcass4 30 of 4 0.30Down
Larval CNS3 20 of 4 0.22Down
Larval Salivary gland3 10 of 4 0.24Down
Larval midgut3 00 of 4 0.21Down
Larval tubule3 10 of 4 0.20Down
Larval hindgut3 01 of 4 0.28Down
Larval fat body63 194 of 4 4.50None
Larval trachea2 10 of 4 0.20Down
Larval carcass2 10 of 4 0.16Down
S2 cells (growing)12 14 of 4 0.86None
Whole fly14 04 of 4

Looking for FBgn0037751. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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