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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037754 through 18771 annotations produced 1 hits



(CG8500):

Annotation Number : CG8500
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037754
Gbrowse : chr3R:5610407-5615053 (+) // 99.82 //
Probeset : 1635009_at
Accessions : protein= NP_649948;, nucleotide= NM_141691;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic anno
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0037754.
Homophila reports that CG8500 is a close match (4e-20) to human gene ALPS4;NRAS (NP_002515), a gene associated with Autoimmune lymphoproliferative syndrome type IV (3);Colorectal cancer, 114500 (3);Thyroid carcinoma, follicular, 188470 (3).
BioGrid reports that CG8500 interacts with CG8759 .
VDRC has 3 RNAi stocks for FBgn0037754 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain672 284 of 423.10Up
Head164 94 of 4 5.70Up
Eye98 114 of 4 3.39Up
Thoracicoabdominal ganglion598 124 of 420.60Up
Salivary gland20 53 of 4 0.70None
Crop20 14 of 4 0.70Down
Midgut11 14 of 4 0.40Down
Tubule11 13 of 4 0.40Down
Hindgut11 24 of 4 0.40Down
Heart13 14 of 4 0.46Down
Fat body15 44 of 4 0.52Down
Ovary17 24 of 4 0.60Down
Testis3 01 of 4 0.10Down
Male accessory glands11 03 of 4 0.40Down
Virgin spermatheca9 04 of 4 0.33Down
Mated spermatheca9 04 of 4 0.31Down
Adult carcass17 43 of 4 0.60None
Larval CNS196 224 of 4 6.77Up
Larval Salivary gland21 14 of 4 0.75Down
Larval midgut16 14 of 4 0.57Down
Larval tubule12 24 of 4 0.40Down
Larval hindgut14 14 of 4 0.49Down
Larval fat body8 13 of 4 0.30Down
Larval trachea11 14 of 4 0.39Down
Larval carcass10 24 of 4 0.37Down
S2 cells (growing)56 44 of 4 1.95Up
Whole fly29 24 of 4

Looking for FBgn0037754. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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