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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037755 through 18771 annotations produced 1 hits



(CG12945):

Annotation Number : CG12945
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037755
Gbrowse : chr3R:5615151-5616939 (-) // 100.0 //
Probeset : 1636296_at
Accessions : protein= NP_001097732;, nucleotide= NM_001104262;
FlyMine data for FBgn0037755.
BDGP gene expression has embryonic in situ data for CG12945: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037755 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 14 of 4 0.60Down
Head32 64 of 4 0.50Down
Eye22 24 of 4 0.35Down
Thoracicoabdominal ganglion16 14 of 4 0.30Down
Salivary gland39 31 of 4 0.61Down
Crop66 34 of 4 1.00None
Midgut48 54 of 4 0.80None
Tubule24 23 of 4 0.40Down
Hindgut74 34 of 4 1.20None
Heart29 14 of 4 0.46Down
Fat body21 34 of 4 0.33Down
Ovary108 74 of 4 1.70Up
Testis9 12 of 4 0.10Down
Male accessory glands26 33 of 4 0.40Down
Virgin spermatheca8 10 of 4 0.14Down
Mated spermatheca12 20 of 4 0.19Down
Adult carcass28 24 of 4 0.50Down
Larval CNS23 14 of 4 0.37Down
Larval Salivary gland47 73 of 4 0.75None
Larval midgut15 12 of 4 0.24Down
Larval tubule66 04 of 4 1.00None
Larval hindgut37 54 of 4 0.59Down
Larval fat body12 22 of 4 0.20Down
Larval trachea46 44 of 4 0.73None
Larval carcass31 34 of 4 0.50Down
S2 cells (growing)112 24 of 4 1.75Up
Whole fly63 74 of 4

Looking for FBgn0037755. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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