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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037756 through 18771 annotations produced 1 hits



(CG8507):

Annotation Number : CG8507
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037756
Gbrowse : chr3R:5617191-5618840 (+) // 100.0 //
Probeset : 1626371_at
Accessions : protein= NP_649950;, nucleotide= NM_141693;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005875 // microtubule associated complex //
Interpro : 0008201 // heparin binding // inferred from electronic annotation /// 0050750 // low-density lipoprotein receptor bindin
FlyMine data for FBgn0037756.
BDGP gene expression has embryonic in situ data for CG8507: 20 pix of staining in 6 body parts.
VDRC has 3 RNAi stocks for FBgn0037756 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain234 ± 114 of 4 0.40Down
Head299 ± 164 of 4 0.50Down
Eye268 ± 114 of 4 0.47Down
Thoracicoabdominal ganglion272 ± 74 of 4 0.50Down
Salivary gland251 ± 224 of 4 0.44Down
Crop355 ± 124 of 4 0.60Down
Midgut137 ± 74 of 4 0.20Down
Tubule138 ± 144 of 4 0.20Down
Hindgut247 ± 104 of 4 0.40Down
Heart540 ± 124 of 4 0.95None
Fat body553 ± 414 of 4 0.98None
Ovary1051 ± 134 of 4 1.90Up
Testis151 ± 94 of 4 0.30Down
Male accessory glands380 ± 134 of 4 0.70Down
Virgin spermatheca435 ± 144 of 4 0.77Down
Mated spermatheca453 ± 194 of 4 0.80Down
Adult carcass391 ± 164 of 4 0.70Down
Larval CNS319 ± 94 of 4 0.56Down
Larval Salivary gland350 ± 64 of 4 0.62Down
Larval midgut115 ± 44 of 4 0.20Down
Larval tubule388 ± 124 of 4 0.70Down
Larval hindgut309 ± 154 of 4 0.54Down
Larval fat body814 ± 794 of 4 1.40None
Larval trachea502 ± 834 of 4 0.89None
Larval carcass387 ± 94 of 4 0.68Down
S2 cells (growing)1586 ± 274 of 4 2.80Up
Whole fly567 ± 104 of 4

Looking for FBgn0037756. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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