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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037761 through 18771 annotations produced 1 hits



(CG8534):

Annotation Number : CG8534
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037761
Gbrowse : chr3R:5638506-5639527 (+) // 100.0 //
Probeset : 1631197_at
Accessions : protein= NP_649955;, nucleotide= NM_141698;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0037761.
Homophila reports that CG8534 is a close match (3e-30) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
VDRC has 3 RNAi stocks for FBgn0037761 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head4 ± 20 of 4 0.50None
Eye1 ± 00 of 4 0.16None
Thoracicoabdominal ganglion6 ± 10 of 4 0.70None
Salivary gland10 ± 40 of 4 1.09None
Crop3 ± 10 of 4 0.30None
Midgut13 ± 10 of 4 1.50None
Tubule4 ± 10 of 4 0.50Down
Hindgut7 ± 10 of 4 0.80None
Heart45 ± 34 of 4 4.92Up
Fat body45 ± 74 of 4 4.90Up
Ovary4 ± 00 of 4 0.50None
Testis10 ± 11 of 4 1.20None
Male accessory glands7 ± 20 of 4 0.80None
Virgin spermatheca7 ± 01 of 4 0.84None
Mated spermatheca4 ± 10 of 4 0.46None
Adult carcass44 ± 42 of 4 4.80Up
Larval CNS5 ± 10 of 4 0.61None
Larval Salivary gland5 ± 10 of 4 0.55None
Larval midgut12 ± 00 of 4 1.35None
Larval tubule5 ± 10 of 4 0.60None
Larval hindgut5 ± 10 of 4 0.54None
Larval fat body6 ± 10 of 4 0.70None
Larval trachea9 ± 111 of 4 1.07None
Larval carcass403 ± 654 of 443.36Up
S2 cells (growing)5 ± 10 of 4 0.59None
Whole fly9 ± 31 of 4

Looking for FBgn0037761. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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