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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037773 through 18771 annotations produced 1 hits



(CG5359):

Annotation Number : CG5359
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037773
Gbrowse : chr3R:5825490-5826997 (-) // 100.0 //
Probeset : 1634434_at
Accessions : protein= NP_001163579; /// NP_649966;, nucleotide= NM_001170108; /// NM_141709;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from elec
FlyMine data for FBgn0037773.
BDGP gene expression has embryonic in situ data for CG5359: 11 pix of staining in 14 body parts.
BioGrid reports that CG5359 interacts with CG6241 CG6398 CG8247 CG8479 CG9063 CG9139 CG9193 CG9198 CG9984 .
VDRC has 3 RNAi stocks for FBgn0037773 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 14 of 4 0.60Down
Head19 ± 24 of 4 0.30Down
Eye20 ± 04 of 4 0.30Down
Thoracicoabdominal ganglion40 ± 34 of 4 0.60Down
Salivary gland34 ± 54 of 4 0.52Down
Crop24 ± 14 of 4 0.40Down
Midgut20 ± 14 of 4 0.30Down
Tubule25 ± 04 of 4 0.40Down
Hindgut24 ± 14 of 4 0.40Down
Heart5 ± 12 of 4 0.08Down
Fat body11 ± 41 of 4 0.17Down
Ovary153 ± 84 of 4 2.30Up
Testis71 ± 34 of 4 1.10None
Male accessory glands9 ± 31 of 4 0.10Down
Virgin spermatheca10 ± 13 of 4 0.16Down
Mated spermatheca13 ± 14 of 4 0.21Down
Adult carcass9 ± 10 of 4 0.10Down
Larval CNS134 ± 64 of 4 2.02Up
Larval Salivary gland52 ± 34 of 4 0.79None
Larval midgut11 ± 13 of 4 0.18Down
Larval tubule29 ± 04 of 4 0.40Down
Larval hindgut26 ± 14 of 4 0.40Down
Larval fat body18 ± 43 of 4 0.30Down
Larval trachea26 ± 24 of 4 0.40Down
Larval carcass15 ± 13 of 4 0.24Down
S2 cells (growing)60 ± 24 of 4 0.91None
Whole fly66 ± 64 of 4

Looking for FBgn0037773. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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