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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037777 through 18771 annotations produced 1 hits



(CG11722):

Annotation Number : CG11722
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037777
Gbrowse : chr3R:5870319-5871245 (-) // 100.0 //
Probeset : 1639725_at
Accessions : protein= NP_649970;, nucleotide= NM_141713;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037777.
BDGP gene expression has embryonic in situ data for CG11722: 4 pix of staining in 1 body parts.
Homophila reports that CG11722 is a close match (1e-16) to human gene C6orf66;HRPAP20 (NP_054884), a gene associated with Mitochondrial complex I deficiency, 252010 (3).
BioGrid reports that CG11722 interacts with CG15634 CG18627 CG5345 CG6363 .
TRiP has 1 RNAi stocks for FBgn0037777 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037777 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain189 ± 64 of 4 1.50Up
Head117 ± 44 of 4 0.90None
Eye157 ± 94 of 4 1.22None
Thoracicoabdominal ganglion254 ± 74 of 4 2.00Up
Salivary gland109 ± 134 of 4 0.85None
Crop78 ± 04 of 4 0.60Down
Midgut102 ± 44 of 4 0.80Down
Tubule87 ± 14 of 4 0.70Down
Hindgut104 ± 24 of 4 0.80Down
Heart88 ± 34 of 4 0.68Down
Fat body101 ± 94 of 4 0.78Down
Ovary133 ± 14 of 4 1.00None
Testis505 ± 154 of 4 3.90Up
Male accessory glands63 ± 24 of 4 0.50Down
Virgin spermatheca102 ± 44 of 4 0.79Down
Mated spermatheca116 ± 124 of 4 0.90None
Adult carcass90 ± 74 of 4 0.70Down
Larval CNS94 ± 64 of 4 0.73Down
Larval Salivary gland88 ± 34 of 4 0.69Down
Larval midgut70 ± 14 of 4 0.54Down
Larval tubule53 ± 34 of 4 0.40Down
Larval hindgut89 ± 74 of 4 0.69Down
Larval fat body96 ± 244 of 4 0.70None
Larval trachea56 ± 34 of 4 0.44Down
Larval carcass65 ± 84 of 4 0.51Down
S2 cells (growing)44 ± 04 of 4 0.34Down
Whole fly129 ± 44 of 4

Looking for FBgn0037777. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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