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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037779 through 18771 annotations produced 1 hits



(CG12811):

Annotation Number : CG12811
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037779
Gbrowse : chr3R:5873102-5874258 (-) // 100.0 //
Probeset : 1640989_at
Accessions : protein= NP_649972;, nucleotide= NM_141715;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037779.
BioGrid reports that CG12811 interacts with CG15308 CG13625 CG1469 CG18731 CG31758 CG3386 CG4183 CG5227 CG7065 CG8580 .
VDRC has 1 RNAi stocks for FBgn0037779 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 24 of 4 0.30Down
Head274 ± 134 of 4 1.60Up
Eye129 ± 164 of 4 0.73None
Thoracicoabdominal ganglion79 ± 14 of 4 0.40Down
Salivary gland619 ± 444 of 4 3.50Up
Crop294 ± 64 of 4 1.70Up
Midgut53 ± 24 of 4 0.30Down
Tubule136 ± 44 of 4 0.80Down
Hindgut159 ± 54 of 4 0.90Down
Heart424 ± 114 of 4 2.40Up
Fat body669 ± 314 of 4 3.78Up
Ovary264 ± 34 of 4 1.50Up
Testis24 ± 14 of 4 0.10Down
Male accessory glands235 ± 64 of 4 1.30Up
Virgin spermatheca820 ± 284 of 4 4.63Up
Mated spermatheca801 ± 514 of 4 4.53Up
Adult carcass393 ± 124 of 4 2.20Up
Larval CNS84 ± 44 of 4 0.48Down
Larval Salivary gland300 ± 84 of 4 1.70Up
Larval midgut33 ± 14 of 4 0.19Down
Larval tubule265 ± 94 of 4 1.50Up
Larval hindgut224 ± 104 of 4 1.27Up
Larval fat body1813 ± 2114 of 410.20Up
Larval trachea209 ± 284 of 4 1.19None
Larval carcass223 ± 14 of 4 1.26Up
S2 cells (growing)309 ± 104 of 4 1.75Up
Whole fly177 ± 44 of 4

Looking for FBgn0037779. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime