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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037780 through 18771 annotations produced 1 hits


Annotation Number : CG3925
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037780
Gbrowse : chr3R:5874887-5877308 (+) // 100.0 //
Probeset : 1625854_at
Accessions : protein= NP_649973;, nucleotide= NM_141716;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037780.
BDGP gene expression has embryonic in situ data for CG3925: 4 pix of staining in 1 body parts.
Homophila reports that CG3925 is a close match (9e-35) to human gene CRBN;MRT2A (NP_057386), a gene associated with Mental retardation, autosomal recessive 2A, 607417 (3).
BioGrid reports that CG3925 interacts with CG9480 CG9573 .
VDRC has 3 RNAi stocks for FBgn0037780 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain197 54 of 4 2.20Up
Head108 64 of 4 1.20None
Eye138 44 of 4 1.55Up
Thoracicoabdominal ganglion166 24 of 4 1.90Up
Salivary gland89 34 of 4 1.00None
Crop75 44 of 4 0.80None
Midgut36 24 of 4 0.40Down
Tubule90 44 of 4 1.00None
Hindgut83 44 of 4 0.90None
Heart70 44 of 4 0.79Down
Fat body71 74 of 4 0.80Down
Ovary111 14 of 4 1.20Up
Testis163 64 of 4 1.80Up
Male accessory glands77 54 of 4 0.90None
Virgin spermatheca74 14 of 4 0.83Down
Mated spermatheca56 24 of 4 0.63Down
Adult carcass92 64 of 4 1.00None
Larval CNS92 34 of 4 1.04None
Larval Salivary gland43 14 of 4 0.49Down
Larval midgut41 54 of 4 0.46Down
Larval tubule112 24 of 4 1.30Up
Larval hindgut62 64 of 4 0.70Down
Larval fat body112 34 of 4 1.30Up
Larval trachea41 24 of 4 0.46Down
Larval carcass64 84 of 4 0.72None
S2 cells (growing)56 44 of 4 0.63Down
Whole fly89 24 of 4

Looking for FBgn0037780. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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