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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037782 through 18771 annotations produced 1 hits



CG12813 (Npc2d):

Annotation Number : CG12813
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037782
Gbrowse : chr3R:5881212-5881801 (-) // 100.0 //
Probeset : 1633050_at
Accessions : protein= NP_649975;, nucleotide= NM_141718;
FlyMine data for FBgn0037782.
BioGrid reports that CG12813 interacts with CG9986 .
VDRC has 2 RNAi stocks for FBgn0037782 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland7 ± 40 of 4 0.03Down
Crop4 ± 10 of 4 0.00Down
Midgut2951 ± 1714 of 410.80Up
Tubule7 ± 10 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart3 ± 10 of 4 0.01Down
Fat body4 ± 10 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis6 ± 11 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 00 of 4 0.02Down
Mated spermatheca5 ± 10 of 4 0.02Down
Adult carcass3 ± 00 of 4 0.00Down
Larval CNS2 ± 20 of 4 0.01Down
Larval Salivary gland4 ± 21 of 4 0.02Down
Larval midgut2867 ± 974 of 410.45Up
Larval tubule34 ± 14 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.02Down
Larval fat body7 ± 30 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass7 ± 20 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly274 ± 384 of 4

Looking for FBgn0037782. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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