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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037783 through 18771 annotations produced 1 hits

CG3934 (Npc2c):

Annotation Number : CG3934
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037783
Gbrowse : chr3R:5886018-5886858 (+) // 100.0 //
Probeset : 1640045_at
Accessions : protein= NP_649976;, nucleotide= NM_141719;
FlyMine data for FBgn0037783.
VDRC has 3 RNAi stocks for FBgn0037783 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10None
Head2 00 of 4 0.20None
Eye1 00 of 4 0.08None
Thoracicoabdominal ganglion2 00 of 4 0.20None
Salivary gland7 30 of 4 0.51None
Crop2 00 of 4 0.10None
Midgut277 454 of 419.20Up
Tubule2 00 of 4 0.20Down
Hindgut2 00 of 4 0.20None
Heart2 00 of 4 0.18None
Fat body2 10 of 4 0.17None
Ovary0 00 of 4 0.10None
Testis1 00 of 4 0.10None
Male accessory glands1 00 of 4 0.10None
Virgin spermatheca1 00 of 4 0.10None
Mated spermatheca1 00 of 4 0.13None
Adult carcass5 00 of 4 0.30None
Larval CNS3 20 of 4 0.22None
Larval Salivary gland2 00 of 4 0.17None
Larval midgut1643 1004 of 4113.70Up
Larval tubule2 00 of 4 0.20None
Larval hindgut10 10 of 4 0.69None
Larval fat body2 00 of 4 0.20None
Larval trachea0 00 of 4 0.06None
Larval carcass2 00 of 4 0.16None
S2 cells (growing)3 00 of 4 0.21None
Whole fly14 61 of 4

Looking for FBgn0037783. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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