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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037786 through 18771 annotations produced 1 hits


Annotation Number : CG5361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037786
Gbrowse : chr3R:5899735-5901088 (-) // 100.0 //
Probeset : 1638253_at
Accessions : protein= NP_649978;, nucleotide= NM_141721;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inf
FlyMine data for FBgn0037786.
Homophila reports that CG5361 is a close match (6e-18) to human gene (NP_001623), a gene associated with .
VDRC has 2 RNAi stocks for FBgn0037786 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.30Down
Head4 11 of 4 0.30Down
Eye3 21 of 4 0.21Down
Thoracicoabdominal ganglion6 00 of 4 0.40Down
Salivary gland8 20 of 4 0.48Down
Crop4 10 of 4 0.20Down
Midgut33 24 of 4 2.00Up
Tubule535 64 of 432.00Up
Hindgut167 134 of 410.00Up
Heart1 00 of 4 0.11Down
Fat body4 30 of 4 0.25Down
Ovary4 00 of 4 0.30Down
Testis5 11 of 4 0.30Down
Male accessory glands10 01 of 4 0.60Down
Virgin spermatheca4 21 of 4 0.29Down
Mated spermatheca6 00 of 4 0.40Down
Adult carcass7 10 of 4 0.50Down
Larval CNS2 10 of 4 0.14Down
Larval Salivary gland4 10 of 4 0.28Down
Larval midgut19 61 of 4 1.16None
Larval tubule424 534 of 425.30Up
Larval hindgut73 184 of 4 4.36None
Larval fat body8 21 of 4 0.50Down
Larval trachea0 00 of 4 0.04Down
Larval carcass2 10 of 4 0.18Down
S2 cells (growing)6 00 of 4 0.36Down
Whole fly16 14 of 4

Looking for FBgn0037786. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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