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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037788 through 18771 annotations produced 1 hits



(CG3940):

Annotation Number : CG3940
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037788
Gbrowse : chr3R:5938267-5945142 (+) // 100.0 //
Probeset : 1627647_at
Accessions : protein= NP_649979;, nucleotide= NM_141722;
Interpro : 0004089 // carbonate dehydratase activity // inferred from sequence or structural similarity /// 0004089 // carbonate de
FlyMine data for FBgn0037788.
Homophila reports that CG3940 is a close match (4e-21) to human gene (NP_001729), a gene associated with .
TRiP has 1 RNAi stocks for FBgn0037788 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037788 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1329 174 of 4 6.90Up
Head553 254 of 4 2.90Up
Eye126 94 of 4 0.65Down
Thoracicoabdominal ganglion2068 504 of 410.70Up
Salivary gland112 74 of 4 0.58Down
Crop10 20 of 4 0.10Down
Midgut434 74 of 4 2.20Up
Tubule16 42 of 4 0.10Down
Hindgut364 124 of 4 1.90Up
Heart290 244 of 4 1.50Up
Fat body682 844 of 4 3.52Up
Ovary168 24 of 4 0.90None
Testis16 14 of 4 0.10Down
Male accessory glands11 20 of 4 0.10Down
Virgin spermatheca1918 1394 of 4 9.90Up
Mated spermatheca683 964 of 4 3.52Up
Adult carcass559 84 of 4 2.90Up
Larval CNS694 594 of 4 3.58Up
Larval Salivary gland14 31 of 4 0.07Down
Larval midgut475 414 of 4 2.45Up
Larval tubule25 14 of 4 0.10Down
Larval hindgut176 114 of 4 0.91None
Larval fat body33 44 of 4 0.20Down
Larval trachea76 544 of 4 0.40Down
Larval carcass503 454 of 4 2.59Up
S2 cells (growing)370 284 of 4 1.91Up
Whole fly193 134 of 4

Looking for FBgn0037788. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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