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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037794 through 18771 annotations produced 1 hits



(CG6254):

Annotation Number : CG6254
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037794
Gbrowse : chr3R:5984857-5987050 (-) // 100.0 //
Probeset : 1637437_at
Accessions : protein= NP_649983;, nucleotide= NM_141726;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037794.
Homophila reports that CG6254 is a close match (3e-11) to human gene IK1;IKZF1;LYF1;ZNFN1A1 (NP_006051), a gene associated with Leukemia, acute lymphoblastic (3).
BioGrid reports that CG6254 interacts with CG7676 .
VDRC has 1 RNAi stocks for FBgn0037794 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 ± 34 of 4 2.40Up
Head52 ± 44 of 4 1.00None
Eye42 ± 14 of 4 0.83Down
Thoracicoabdominal ganglion112 ± 54 of 4 2.20Up
Salivary gland52 ± 63 of 4 1.02None
Crop32 ± 24 of 4 0.60Down
Midgut19 ± 04 of 4 0.40Down
Tubule34 ± 14 of 4 0.70Down
Hindgut27 ± 14 of 4 0.50Down
Heart28 ± 14 of 4 0.56Down
Fat body27 ± 23 of 4 0.54Down
Ovary92 ± 04 of 4 1.80Up
Testis8 ± 13 of 4 0.20Down
Male accessory glands29 ± 14 of 4 0.60Down
Virgin spermatheca35 ± 24 of 4 0.69Down
Mated spermatheca31 ± 24 of 4 0.63Down
Adult carcass27 ± 23 of 4 0.50Down
Larval CNS133 ± 134 of 4 2.63Up
Larval Salivary gland31 ± 14 of 4 0.61Down
Larval midgut17 ± 04 of 4 0.35Down
Larval tubule51 ± 34 of 4 1.00None
Larval hindgut32 ± 34 of 4 0.65Down
Larval fat body29 ± 64 of 4 0.60Down
Larval trachea45 ± 34 of 4 0.89None
Larval carcass38 ± 34 of 4 0.75Down
S2 cells (growing)63 ± 24 of 4 1.25Up
Whole fly50 ± 14 of 4

Looking for FBgn0037794. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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