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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037796 through 18771 annotations produced 2 hits



(CG12814):

Annotation Number : CT31943
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037796
Gbrowse : chr3R:6004369-6004582 (-) // 100.0 //
Probeset : 1627875_at
Accessions : protein= NP_001036700; /// NP_649984;, nucleotide= NM_001043235; /// NM_141727;
FlyMine data for FBgn0037796.
VDRC has 2 RNAi stocks for FBgn0037796 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.50Down
Head15 24 of 4 1.50None
Eye29 44 of 4 2.82Up
Thoracicoabdominal ganglion8 22 of 4 0.80None
Salivary gland36 30 of 4 3.46Up
Crop71 114 of 4 6.90Up
Midgut10 00 of 4 1.00None
Tubule7 10 of 4 0.70Down
Hindgut31 14 of 4 3.00Up
Heart4 11 of 4 0.46Down
Fat body12 24 of 4 1.17None
Ovary5 01 of 4 0.50Down
Testis10 23 of 4 1.00None
Male accessory glands16 23 of 4 1.60None
Virgin spermatheca7 12 of 4 0.70None
Mated spermatheca9 01 of 4 0.94None
Adult carcass20 24 of 4 2.00Up
Larval CNS3 10 of 4 0.34Down
Larval Salivary gland9 11 of 4 0.93None
Larval midgut12 10 of 4 1.19None
Larval tubule5 10 of 4 0.50Down
Larval hindgut35 24 of 4 3.40Up
Larval fat body8 21 of 4 0.80None
Larval trachea134 34 of 412.95Up
Larval carcass19 43 of 4 1.90None
S2 cells (growing)5 11 of 4 0.51None
Whole fly10 12 of 4



(CG12814):

Annotation Number : CG12814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037796
Gbrowse : chr3R:5997988-6000544 (-) // 100.0 //
Probeset : 1629944_at
Accessions : protein= NP_001036700; /// NP_649984;, nucleotide= NM_001043235; /// NM_141727;
FlyMine data for FBgn0037796.
VDRC has 2 RNAi stocks for FBgn0037796 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 20 of 4 0.40Down
Head59 93 of 4 2.30Up
Eye167 134 of 4 6.39Up
Thoracicoabdominal ganglion9 30 of 4 0.30Down
Salivary gland99 104 of 4 3.82Up
Crop271 94 of 410.40Up
Midgut30 10 of 4 1.20None
Tubule2 00 of 4 0.10Down
Hindgut129 54 of 4 5.00Up
Heart16 03 of 4 0.62Down
Fat body15 40 of 4 0.58Down
Ovary1 00 of 4 0.10Down
Testis27 24 of 4 1.10None
Male accessory glands42 13 of 4 1.60Up
Virgin spermatheca18 02 of 4 0.72None
Mated spermatheca39 44 of 4 1.52Up
Adult carcass69 24 of 4 2.70Up
Larval CNS7 30 of 4 0.27Down
Larval Salivary gland18 10 of 4 0.71None
Larval midgut6 20 of 4 0.24Down
Larval tubule4 20 of 4 0.20Down
Larval hindgut118 164 of 4 4.55Up
Larval fat body7 20 of 4 0.30Down
Larval trachea660 754 of 425.28Up
Larval carcass82 84 of 4 3.16Up
S2 cells (growing)3 10 of 4 0.15Down
Whole fly26 23 of 4

Looking for FBgn0037796. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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