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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037801 through 18771 annotations produced 1 hits



/// (CG3999 /// DsecCG3999):

Annotation Number : CG3999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037801
Gbrowse : chr3R:6077239-6081002 (+) // 100.0 //
Probeset : 1624695_at
Accessions : protein= NP_649989;, nucleotide= NM_141732;
Pathway : 0005960 // glycine cleavage complex // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004375 // glycine dehydrogenase (decarboxylati
FlyMine data for FBgn0037801.
BDGP gene expression has embryonic in situ data for CG3999: 34 pix of staining in 4 body parts.
Homophila reports that CG3999 is a close match (0) to human gene GCE;GCSP;GLDC;HYGN1;NKH (NP_000161), a gene associated with Glycine encephalopathy, 605899 (3).
VDRC has 3 RNAi stocks for FBgn0037801 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 13 of 4 0.40Down
Head88 24 of 4 3.30Up
Eye22 53 of 4 0.83None
Thoracicoabdominal ganglion8 11 of 4 0.30Down
Salivary gland4 20 of 4 0.17Down
Crop7 10 of 4 0.30Down
Midgut5 00 of 4 0.20Down
Tubule17 33 of 4 0.70Down
Hindgut13 12 of 4 0.50Down
Heart56 24 of 4 2.10Up
Fat body313 664 of 411.66Up
Ovary2 00 of 4 0.10Down
Testis5 00 of 4 0.20Down
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca242 74 of 4 9.01Up
Mated spermatheca138 324 of 4 5.16Up
Adult carcass119 34 of 4 4.40Up
Larval CNS5 10 of 4 0.21Down
Larval Salivary gland32 54 of 4 1.22None
Larval midgut5 10 of 4 0.20Down
Larval tubule15 13 of 4 0.60Down
Larval hindgut41 104 of 4 1.54None
Larval fat body2208 1764 of 482.10Up
Larval trachea9 101 of 4 0.36Down
Larval carcass11 12 of 4 0.43Down
S2 cells (growing)6 12 of 4 0.25Down
Whole fly26 34 of 4

Looking for FBgn0037801. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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