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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037827 through 18771 annotations produced 1 hits


(CG4073):

Annotation Number : CG4073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037827
Gbrowse : chr3R:6540519-6541621 (+) // 100.0 //
Probeset : 1631312_at
Accessions : protein= NP_650010;, nucleotide= NM_141753;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037827.
BioGrid reports that CG4073 interacts with CG7574 .
VDRC has 2 RNAi stocks for FBgn0037827 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 0.10Down
Head6 ± 10 of 4 0.10Down
Eye5 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland4 ± 20 of 4 0.09Down
Crop11 ± 21 of 4 0.20Down
Midgut10 ± 11 of 4 0.20Down
Tubule5 ± 10 of 4 0.10Down
Hindgut9 ± 21 of 4 0.20Down
Heart2 ± 00 of 4 0.04Down
Fat body7 ± 30 of 4 0.15Down
Ovary2 ± 00 of 4 0.10Down
Testis656 ± 224 of 413.00Up
Male accessory glands9 ± 21 of 4 0.20Down
Virgin spermatheca5 ± 11 of 4 0.11Down
Mated spermatheca3 ± 10 of 4 0.07Down
Adult carcass10 ± 30 of 4 0.20Down
Larval CNS4 ± 10 of 4 0.09Down
Larval Salivary gland7 ± 00 of 4 0.14Down
Larval midgut7 ± 20 of 4 0.15Down
Larval tubule7 ± 30 of 4 0.10Down
Larval hindgut6 ± 11 of 4 0.12Down
Larval fat body44 ± 183 of 4 0.90None
Larval trachea6 ± 21 of 4 0.13Down
Larval carcass7 ± 10 of 4 0.14Down
S2 cells (growing)6 ± 10 of 4 0.12Down
Whole fly50 ± 24 of 4

Looking for FBgn0037827. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime