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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037831 through 18771 annotations produced 1 hits



Chromosome associated protein H2 (Cap-H2):

Annotation Number : CG14685
Flybase ID : FBgn0037831
Gbrowse : chr3R:6587031-6591885 (+) // 100.0 //
Probeset : 1632170_a_at
Accessions : protein= NP_650014; /// NP_731502; /// NP_996193;, nucleotide= NM_141757; /// NM_169358; /// NM_206471;
Pathway : 0000796 // condensin complex // inferred from sequence or structural similarity /// 0000796 // condensin complex // non-
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037831.
BioGrid reports that CG14685 interacts with CG5612 CG6363 .
TRiP has 1 RNAi stocks for FBgn0037831 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037831 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 34 of 4 2.70Up
Head36 54 of 4 1.20None
Eye25 24 of 4 0.82None
Thoracicoabdominal ganglion40 44 of 4 1.30None
Salivary gland39 13 of 4 1.27Up
Crop47 34 of 4 1.50Up
Midgut31 24 of 4 1.00None
Tubule22 13 of 4 0.70Down
Hindgut39 14 of 4 1.30Up
Heart14 23 of 4 0.48Down
Fat body19 24 of 4 0.63Down
Ovary41 14 of 4 1.30Up
Testis30 04 of 4 1.00None
Male accessory glands37 44 of 4 1.20None
Virgin spermatheca13 02 of 4 0.42Down
Mated spermatheca13 12 of 4 0.45Down
Adult carcass23 11 of 4 0.80Down
Larval CNS84 114 of 4 2.72Up
Larval Salivary gland19 24 of 4 0.62Down
Larval midgut17 20 of 4 0.55Down
Larval tubule14 22 of 4 0.50Down
Larval hindgut20 14 of 4 0.65Down
Larval fat body20 13 of 4 0.70Down
Larval trachea27 34 of 4 0.90None
Larval carcass23 14 of 4 0.77Down
S2 cells (growing)80 24 of 4 2.59Up
Whole fly31 14 of 4

Looking for FBgn0037831. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime