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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037835 through 18771 annotations produced 1 hits


Annotation Number : CG14687
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037835
Gbrowse : chr3R:6618627-6619370 (+) // 100.0 //
Probeset : 1637008_at
Accessions : protein= NP_650018;, nucleotide= NM_141761;
Interpro : 0032027 // myosin light chain binding // inferred from reviewed computational analysis
FlyMine data for FBgn0037835.
BDGP gene expression has embryonic in situ data for CG14687: 26 pix of staining in 10 body parts.
VDRC has 3 RNAi stocks for FBgn0037835 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1191 274 of 4 4.30Up
Head1180 534 of 4 4.30Up
Eye348 334 of 4 1.26None
Thoracicoabdominal ganglion1967 454 of 4 7.10Up
Salivary gland61 31 of 4 0.22Down
Crop1794 514 of 4 6.50Up
Midgut132 64 of 4 0.50Down
Tubule32 31 of 4 0.10Down
Hindgut1037 514 of 4 3.80Up
Heart3090 1804 of 411.19Up
Fat body106 424 of 4 0.39Down
Ovary35 24 of 4 0.10Down
Testis69 24 of 4 0.30Down
Male accessory glands123 54 of 4 0.40Down
Virgin spermatheca45 54 of 4 0.16Down
Mated spermatheca78 174 of 4 0.28Down
Adult carcass798 584 of 4 2.90Up
Larval CNS230 214 of 4 0.83None
Larval Salivary gland2 00 of 4 0.01Down
Larval midgut70 44 of 4 0.26Down
Larval tubule26 22 of 4 0.10Down
Larval hindgut380 184 of 4 1.38Up
Larval fat body13 11 of 4 0.00Down
Larval trachea49 584 of 4 0.18Down
Larval carcass1035 4724 of 4 3.75None
S2 cells (growing)2 10 of 4 0.01Down
Whole fly276 204 of 4

Looking for FBgn0037835. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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