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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037838 through 18771 annotations produced 1 hits



(CG4089):

Annotation Number : CG4089
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037838
Gbrowse : chr3R:6641012-6643217 (+) // 100.0 //
Probeset : 1636309_at
Accessions : protein= NP_650021;, nucleotide= NM_141764;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004835 // tubulin-tyrosine ligase activity //
FlyMine data for FBgn0037838.
BDGP gene expression has embryonic in situ data for CG4089: 15 pix of staining in 9 body parts.
VDRC has 2 RNAi stocks for FBgn0037838 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 ± 14 of 4 1.50Up
Head83 ± 34 of 4 1.60Up
Eye101 ± 34 of 4 2.00Up
Thoracicoabdominal ganglion81 ± 14 of 4 1.60Up
Salivary gland35 ± 42 of 4 0.70Down
Crop67 ± 54 of 4 1.30None
Midgut16 ± 20 of 4 0.30Down
Tubule4 ± 00 of 4 0.10Down
Hindgut45 ± 14 of 4 0.90None
Heart20 ± 34 of 4 0.40Down
Fat body12 ± 20 of 4 0.24Down
Ovary111 ± 64 of 4 2.20Up
Testis38 ± 24 of 4 0.70Down
Male accessory glands14 ± 21 of 4 0.30Down
Virgin spermatheca11 ± 01 of 4 0.23Down
Mated spermatheca25 ± 24 of 4 0.49Down
Adult carcass40 ± 24 of 4 0.80Down
Larval CNS41 ± 34 of 4 0.81Down
Larval Salivary gland6 ± 10 of 4 0.13Down
Larval midgut6 ± 20 of 4 0.12Down
Larval tubule7 ± 20 of 4 0.20Down
Larval hindgut22 ± 14 of 4 0.45Down
Larval fat body14 ± 21 of 4 0.30Down
Larval trachea40 ± 44 of 4 0.80Down
Larval carcass12 ± 20 of 4 0.25Down
S2 cells (growing)42 ± 14 of 4 0.84Down
Whole fly50 ± 14 of 4

Looking for FBgn0037838. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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