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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037843 through 18771 annotations produced 1 hits



(CG4511):

Annotation Number : CG4511
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037843
Gbrowse : chr3R:6680224-6682351 (+) // 100.0 //
Probeset : 1630705_at
Accessions : protein= NP_001163585; /// NP_650026;, nucleotide= NM_001170114; /// NM_141769;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from sequence or
FlyMine data for FBgn0037843.
BDGP gene expression has embryonic in situ data for CG4511: 30 pix of staining in 6 body parts.
BioGrid reports that CG4511 interacts with CG8507 .
VDRC has 2 RNAi stocks for FBgn0037843 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 ± 44 of 4 0.80None
Head61 ± 44 of 4 0.70Down
Eye78 ± 64 of 4 0.91None
Thoracicoabdominal ganglion65 ± 54 of 4 0.80None
Salivary gland66 ± 63 of 4 0.77None
Crop89 ± 64 of 4 1.00None
Midgut47 ± 44 of 4 0.50Down
Tubule57 ± 24 of 4 0.70Down
Hindgut44 ± 34 of 4 0.50Down
Heart68 ± 54 of 4 0.79None
Fat body62 ± 144 of 4 0.73None
Ovary106 ± 74 of 4 1.20None
Testis87 ± 34 of 4 1.00None
Male accessory glands53 ± 24 of 4 0.60Down
Virgin spermatheca86 ± 24 of 4 1.01None
Mated spermatheca133 ± 54 of 4 1.56Up
Adult carcass51 ± 73 of 4 0.60Down
Larval CNS139 ± 104 of 4 1.62Up
Larval Salivary gland170 ± 94 of 4 1.98Up
Larval midgut44 ± 34 of 4 0.52Down
Larval tubule32 ± 24 of 4 0.40Down
Larval hindgut109 ± 174 of 4 1.27None
Larval fat body42 ± 93 of 4 0.50Down
Larval trachea183 ± 254 of 4 2.14Up
Larval carcass143 ± 94 of 4 1.67Up
S2 cells (growing)83 ± 64 of 4 0.97None
Whole fly85 ± 74 of 4

Looking for FBgn0037843. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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