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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037844 through 18771 annotations produced 1 hits



(CG4570):

Annotation Number : CG4570
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037844
Gbrowse : chr3R:6682512-6683796 (+) // 100.0 //
Probeset : 1637691_at
Accessions : protein= NP_650027;, nucleotide= NM_141770;
Pathway : DNA-mediated // inferred from electronic annotation /// 0015074 // DNA integration // inferred from electronic annotati
FlyMine data for FBgn0037844.
BDGP gene expression has embryonic in situ data for CG4570: 4 pix of staining in 1 body parts.
BioGrid reports that CG4570 interacts with CG7757 CG8813 .
VDRC has 3 RNAi stocks for FBgn0037844 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 24 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 01 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.01Down
Crop4 ± 02 of 4 0.00Down
Midgut6 ± 10 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body3 ± 30 of 4 0.01Down
Ovary565 ± 244 of 4 2.30Up
Testis2 ± 00 of 4 0.00Down
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 13 of 4 0.02Down
Mated spermatheca5 ± 00 of 4 0.02Down
Adult carcass8 ± 31 of 4 0.00Down
Larval CNS292 ± 334 of 4 1.17None
Larval Salivary gland2 ± 00 of 4 0.01Down
Larval midgut3 ± 10 of 4 0.01Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.00Down
Larval fat body5 ± 20 of 4 0.00Down
Larval trachea3 ± 10 of 4 0.01Down
Larval carcass2 ± 00 of 4 0.01Down
S2 cells (growing)69 ± 34 of 4 0.28Down
Whole fly250 ± 364 of 4

Looking for FBgn0037844. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime