FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037848 through 18771 annotations produced 1 hits

Tetraspanin 86D (Tsp86D):

Annotation Number : CG4591
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037848
Gbrowse : chr3R:6694433-6695687 (+) // 100.0 //
Probeset : 1633758_at
Accessions : protein= NP_524309;, nucleotide= NM_079585;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037848.
Homophila reports that CG4591 is a close match (1e-21) to human gene A15;MRX58;MXS1;TM4SF2 (NP_004606), a gene associated with Mental retardation, X-linked 58, 300210 (3).
BioGrid reports that CG4591 interacts with CG9040 CG9238 .
TRiP has 1 RNAi stocks for FBgn0037848 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037848 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	79 ± 1	4 of 4	1.80	Up
Head	28 ± 2	4 of 4	0.60	Down
Eye	26 ± 3	4 of 4	0.58	Down
Thoracicoabdominal ganglion	51 ± 4	4 of 4	1.10	None
Salivary gland	39 ± 2	2 of 4	0.88	None
Crop	22 ± 1	4 of 4	0.50	Down
Midgut	53 ± 1	4 of 4	1.20	None
Tubule	21 ± 1	3 of 4	0.50	Down
Hindgut	28 ± 4	4 of 4	0.60	Down
Heart	65 ± 1	4 of 4	1.45	Up
Fat body	24 ± 4	4 of 4	0.55	Down
Ovary	73 ± 1	4 of 4	1.60	Up
Testis	27 ± 2	4 of 4	0.60	Down
Male accessory glands	22 ± 3	2 of 4	0.50	Down
Virgin spermatheca	14 ± 0	2 of 4	0.31	Down
Mated spermatheca	14 ± 1	4 of 4	0.33	Down
Adult carcass	30 ± 2	4 of 4	0.70	Down
Larval CNS	66 ± 7	4 of 4	1.48	Up
Larval Salivary gland	78 ± 9	4 of 4	1.74	Up
Larval midgut	44 ± 2	4 of 4	1.00	None
Larval tubule	46 ± 1	4 of 4	1.00	None
Larval hindgut	38 ± 3	4 of 4	0.86	None
Larval fat body	34 ± 2	4 of 4	0.80	Down
Larval trachea	54 ± 6	4 of 4	1.20	None
Larval carcass	40 ± 7	4 of 4	0.90	None
S2 cells (growing)	283 ± 11	4 of 4	6.30	Up
Whole fly	45 ± 3	4 of 4

Looking for FBgn0037848. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720