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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037852 through 18771 annotations produced 1 hits



(CG6608):

Annotation Number : CG6608
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037852
Gbrowse : chr3R:6705286-6707909 (-) // 100.0 //
Probeset : 1641606_s_at
Accessions : protein= NP_650034; /// NP_731527;, nucleotide= NM_141777; /// NM_169372;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005488 // binding // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred
FlyMine data for FBgn0037852.
BDGP gene expression has embryonic in situ data for CG6608: 16 pix of staining in 12 body parts.
Homophila reports that CG6608 is a close match (5e-12) to human gene SLC25A20;CACT;CAC (NP_000378), a gene associated with Carnitine-acylcarnitine translocase deficiency (3).
BioGrid reports that CG6608 interacts with CG7158 CG7768 CG9282 .
TRiP has 1 RNAi stocks for FBgn0037852 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037852 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain134 24 of 4 1.20None
Head98 74 of 4 0.80None
Eye90 44 of 4 0.78Down
Thoracicoabdominal ganglion120 54 of 4 1.00None
Salivary gland164 84 of 4 1.41Up
Crop101 44 of 4 0.90None
Midgut95 34 of 4 0.80None
Tubule203 114 of 4 1.80Up
Hindgut105 14 of 4 0.90None
Heart150 94 of 4 1.29Up
Fat body126 124 of 4 1.09None
Ovary165 24 of 4 1.40Up
Testis50 14 of 4 0.40Down
Male accessory glands79 34 of 4 0.70Down
Virgin spermatheca140 44 of 4 1.21None
Mated spermatheca141 104 of 4 1.22None
Adult carcass99 44 of 4 0.90None
Larval CNS97 54 of 4 0.84None
Larval Salivary gland104 24 of 4 0.90None
Larval midgut97 124 of 4 0.84None
Larval tubule157 64 of 4 1.40Up
Larval hindgut75 34 of 4 0.65Down
Larval fat body297 314 of 4 2.60Up
Larval trachea104 154 of 4 0.90None
Larval carcass91 184 of 4 0.79None
S2 cells (growing)161 24 of 4 1.39Up
Whole fly116 84 of 4

Looking for FBgn0037852. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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