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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037853 through 18771 annotations produced 1 hits



/// /// (CG14696 /// DanaGF16171 /// DvarCG14696):

Annotation Number : CG14696
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037853
Gbrowse : chr3R:6708255-6710556 (-) // 100.0 //
Probeset : 1635764_at
Accessions : protein= NP_650035;, nucleotide= NM_141778;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037853.
BioGrid reports that CG14696 interacts with CG5212 CG15011 CG17666 CG30263 CG8942 .
VDRC has 3 RNAi stocks for FBgn0037853 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 14 of 4 2.30Up
Head56 44 of 4 2.40Up
Eye65 34 of 4 2.80Up
Thoracicoabdominal ganglion66 34 of 4 2.80Up
Salivary gland87 54 of 4 3.72Up
Crop72 34 of 4 3.10Up
Midgut58 74 of 4 2.50Up
Tubule8 00 of 4 0.30Down
Hindgut19 14 of 4 0.80None
Heart43 34 of 4 1.87Up
Fat body39 24 of 4 1.67Up
Ovary4 10 of 4 0.20Down
Testis38 54 of 4 1.60None
Male accessory glands8 30 of 4 0.40Down
Virgin spermatheca11 21 of 4 0.50Down
Mated spermatheca12 30 of 4 0.53Down
Adult carcass58 74 of 4 2.50Up
Larval CNS86 144 of 4 3.67Up
Larval Salivary gland45 94 of 4 1.92None
Larval midgut42 74 of 4 1.81None
Larval tubule2 10 of 4 0.10Down
Larval hindgut43 34 of 4 1.86Up
Larval fat body13 22 of 4 0.60Down
Larval trachea107 104 of 4 4.59Up
Larval carcass72 44 of 4 3.10Up
S2 cells (growing)703 134 of 429.96Up
Whole fly23 24 of 4

Looking for FBgn0037853. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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