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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037855 through 18771 annotations produced 1 hits



(CG6621):

Annotation Number : CG6621
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037855
Gbrowse : chr3R:6715489-6719252 (-) // 100.0 //
Probeset : 1637068_at
Accessions : protein= NP_650036;, nucleotide= NM_141779;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0037855.
BioGrid reports that CG6621 interacts with CG7146 CG9007 .
VDRC has 2 RNAi stocks for FBgn0037855 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain134 ± 64 of 4 2.20Up
Head44 ± 24 of 4 0.70Down
Eye51 ± 24 of 4 0.83None
Thoracicoabdominal ganglion107 ± 54 of 4 1.70Up
Salivary gland77 ± 14 of 4 1.24Up
Crop67 ± 34 of 4 1.10None
Midgut33 ± 10 of 4 0.50Down
Tubule39 ± 14 of 4 0.60Down
Hindgut53 ± 24 of 4 0.90None
Heart35 ± 24 of 4 0.57Down
Fat body36 ± 44 of 4 0.59Down
Ovary159 ± 44 of 4 2.60Up
Testis15 ± 04 of 4 0.30Down
Male accessory glands69 ± 34 of 4 1.10None
Virgin spermatheca47 ± 04 of 4 0.76Down
Mated spermatheca38 ± 34 of 4 0.63Down
Adult carcass47 ± 74 of 4 0.80None
Larval CNS176 ± 104 of 4 2.84Up
Larval Salivary gland90 ± 24 of 4 1.46Up
Larval midgut24 ± 04 of 4 0.40Down
Larval tubule46 ± 24 of 4 0.80Down
Larval hindgut47 ± 24 of 4 0.77Down
Larval fat body31 ± 14 of 4 0.50Down
Larval trachea71 ± 134 of 4 1.16None
Larval carcass51 ± 14 of 4 0.84None
S2 cells (growing)75 ± 34 of 4 1.22Up
Whole fly62 ± 34 of 4

Looking for FBgn0037855. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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