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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037856 through 18771 annotations produced 1 hits



(CG4674):

Annotation Number : CG4674
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037856
Gbrowse : chr3R:6711268-6722140 (+) // 99.84 //
Probeset : 1627043_at
Accessions : protein= NP_650037;, nucleotide= NM_141780;
FlyMine data for FBgn0037856.
BDGP gene expression has embryonic in situ data for CG4674: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0037856 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037856 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 ± 54 of 4 1.90Up
Head48 ± 34 of 4 0.90None
Eye22 ± 54 of 4 0.41Down
Thoracicoabdominal ganglion108 ± 54 of 4 2.00Up
Salivary gland22 ± 22 of 4 0.42Down
Crop47 ± 34 of 4 0.90None
Midgut50 ± 54 of 4 0.90None
Tubule22 ± 13 of 4 0.40Down
Hindgut29 ± 14 of 4 0.50Down
Heart24 ± 24 of 4 0.45Down
Fat body31 ± 44 of 4 0.58Down
Ovary108 ± 64 of 4 2.00Up
Testis22 ± 24 of 4 0.40Down
Male accessory glands23 ± 24 of 4 0.40Down
Virgin spermatheca33 ± 44 of 4 0.61Down
Mated spermatheca42 ± 24 of 4 0.77Down
Adult carcass24 ± 61 of 4 0.50Down
Larval CNS150 ± 124 of 4 2.76Up
Larval Salivary gland19 ± 14 of 4 0.36Down
Larval midgut71 ± 104 of 4 1.31None
Larval tubule21 ± 34 of 4 0.40Down
Larval hindgut44 ± 14 of 4 0.81Down
Larval fat body27 ± 14 of 4 0.50Down
Larval trachea101 ± 44 of 4 1.87Up
Larval carcass87 ± 44 of 4 1.61Up
S2 cells (growing)171 ± 104 of 4 3.14Up
Whole fly54 ± 24 of 4

Looking for FBgn0037856. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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