Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037860 through 18771 annotations produced 1 hits



chr3R:6940392-6941428 (-) // 100.0 // ():

Annotation Number : CG6629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626713_at
Accessions : protein= , nucleotide= NP_650041;
Pathway : "0006099 // tricarboxylic acid cycle // inferred from sequence or structural similarity /// 0006105 // succinate metabol
Interpro : succinate to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferr
FlyMine data for full length.
Homophila reports that CG6629 is a close match (3e-11) to human gene PGL3;SDHC (NP_001030589), a gene associated with Paraganglioma and gastric stromal sarcoma, 606864 (3);Paragangliomas, familial nonchromaffin, 3, 605373 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye4 ± 01 of 4 0.06Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland5 ± 10 of 4 0.07Down
Crop2 ± 00 of 4 0.00Down
Midgut5 ± 10 of 4 0.10Down
Tubule4 ± 10 of 4 0.10Down
Hindgut4 ± 10 of 4 0.00Down
Heart3 ± 10 of 4 0.04Down
Fat body4 ± 20 of 4 0.06Down
Ovary2 ± 10 of 4 0.00Down
Testis883 ± 164 of 410.90Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca4 ± 10 of 4 0.06Down
Adult carcass6 ± 30 of 4 0.10Down
Larval CNS2 ± 20 of 4 0.03Down
Larval Salivary gland3 ± 10 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.05Down
Larval fat body101 ± 604 of 4 1.30None
Larval trachea5 ± 61 of 4 0.07Down
Larval carcass4 ± 10 of 4 0.05Down
S2 cells (growing)2 ± 10 of 4 0.03Down
Whole fly81 ± 74 of 4

Looking for FBgn0037860. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime