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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037870 through 18771 annotations produced 1 hits



(CG18577):

Annotation Number : CG18577
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037870
Gbrowse : chr3R:7021827-7022556 (+) // 100.0 //
Probeset : 1628670_at
Accessions : protein= NP_650044;, nucleotide= NM_141787;
FlyMine data for FBgn0037870.
VDRC has 2 RNAi stocks for FBgn0037870 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.30Down
Salivary gland9 ± 50 of 4 0.50None
Crop3 ± 00 of 4 0.20Down
Midgut266 ± 104 of 413.60Up
Tubule4 ± 10 of 4 0.20Down
Hindgut4 ± 20 of 4 0.20Down
Heart2 ± 00 of 4 0.13Down
Fat body1 ± 10 of 4 0.10Down
Ovary1 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.04Down
Mated spermatheca2 ± 00 of 4 0.14Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.16Down
Larval Salivary gland3 ± 10 of 4 0.16Down
Larval midgut85 ± 04 of 4 4.36Up
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.18Down
Larval fat body7 ± 10 of 4 0.40Down
Larval trachea1 ± 10 of 4 0.09Down
Larval carcass0 ± 00 of 4 0.04Down
S2 cells (growing)1 ± 00 of 4 0.08Down
Whole fly19 ± 13 of 4

Looking for FBgn0037870. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime