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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037881 through 18771 annotations produced 1 hits


Annotation Number : CG10703
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037881
Gbrowse : chr3R:7053962-7056290 (-) // 100.0 //
Probeset : 1641069_at
Accessions : protein= NP_650055;, nucleotide= NM_141798;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037881.
BDGP gene expression has embryonic in situ data for CG10703: 4 pix of staining in 1 body parts.
BioGrid reports that CG10703 interacts with CG3780 CG14815 CG15710 CG30480 CG3081 CG4617 CG5062 CG5792 CG5884 CG8548 CG32801 CG32803 .
VDRC has 2 RNAi stocks for FBgn0037881 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain146 14 of 4 2.10Up
Head79 14 of 4 1.10Up
Eye164 64 of 4 2.38Up
Thoracicoabdominal ganglion152 34 of 4 2.20Up
Salivary gland174 114 of 4 2.52Up
Crop52 24 of 4 0.80Down
Midgut44 24 of 4 0.60Down
Tubule74 24 of 4 1.10Up
Hindgut58 14 of 4 0.80Down
Heart47 34 of 4 0.69Down
Fat body54 114 of 4 0.78None
Ovary109 24 of 4 1.60Up
Testis50 44 of 4 0.70Down
Male accessory glands121 64 of 4 1.80Up
Virgin spermatheca83 14 of 4 1.20Up
Mated spermatheca86 64 of 4 1.25None
Adult carcass52 33 of 4 0.80Down
Larval CNS91 84 of 4 1.33Up
Larval Salivary gland267 154 of 4 3.86Up
Larval midgut57 34 of 4 0.83Down
Larval tubule74 34 of 4 1.10None
Larval hindgut87 74 of 4 1.27None
Larval fat body47 24 of 4 0.70Down
Larval trachea87 104 of 4 1.26Up
Larval carcass56 44 of 4 0.81None
S2 cells (growing)110 14 of 4 1.59Up
Whole fly69 14 of 4

Looking for FBgn0037881. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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