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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037885 through 18771 annotations produced 1 hits



(CG17721):

Annotation Number : CG17721
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037885
Gbrowse : chr3R:7061104-7061788 (+) // 100.0 //
Probeset : 1622948_at
Accessions : protein= NP_650059;, nucleotide= NM_141802;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0037885.
BioGrid reports that CG17721 interacts with CG32096 .
VDRC has 1 RNAi stocks for FBgn0037885 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 ± 34 of 4 0.70Down
Head57 ± 14 of 4 0.60Down
Eye63 ± 24 of 4 0.70Down
Thoracicoabdominal ganglion58 ± 14 of 4 0.60Down
Salivary gland73 ± 74 of 4 0.81None
Crop146 ± 54 of 4 1.60Up
Midgut78 ± 34 of 4 0.90Down
Tubule84 ± 54 of 4 0.90None
Hindgut49 ± 34 of 4 0.60Down
Heart66 ± 54 of 4 0.74Down
Fat body60 ± 54 of 4 0.67Down
Ovary154 ± 54 of 4 1.70Up
Testis108 ± 34 of 4 1.20Up
Male accessory glands198 ± 174 of 4 2.20Up
Virgin spermatheca62 ± 34 of 4 0.69Down
Mated spermatheca78 ± 64 of 4 0.87None
Adult carcass69 ± 44 of 4 0.80Down
Larval CNS96 ± 74 of 4 1.07None
Larval Salivary gland186 ± 124 of 4 2.07Up
Larval midgut65 ± 34 of 4 0.73Down
Larval tubule94 ± 44 of 4 1.10None
Larval hindgut57 ± 04 of 4 0.64Down
Larval fat body178 ± 84 of 4 2.00Up
Larval trachea154 ± 154 of 4 1.72Up
Larval carcass130 ± 84 of 4 1.44Up
S2 cells (growing)160 ± 24 of 4 1.78Up
Whole fly90 ± 34 of 4

Looking for FBgn0037885. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime