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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037889 through 18771 annotations produced 1 hits



SCP-containing protein A /// SCP-containing protein B /// SCP-containing protein C (scpr-A /// scpr-B /// scpr-C):

Annotation Number : CG5207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037879 /// FBgn0037888 /// FBgn0037889
Gbrowse : chr3R:7066904-7067845 (+) // 100.0 // /// chr3R:7051314-7052098 (+) // 80.94 // /// chrUextra:9799164-9799831 (-) // 74.54 // /// chr3R:7065860-7066644 (-) // 81.28 //
Probeset : 1632185_s_at
Accessions : protein= NP_650053; /// NP_650061; /// NP_650062;, nucleotide= NM_141796; /// NM_141804; /// NM_141805;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037879 /// FBgn0037888 /// FBgn0037889.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.00Down
Head41 32 of 4 0.00Down
Eye41 93 of 4 0.04Down
Thoracicoabdominal ganglion7 10 of 4 0.00Down
Salivary gland1055 1104 of 4 1.01None
Crop15 00 of 4 0.00Down
Midgut8 10 of 4 0.00Down
Tubule18 10 of 4 0.00Down
Hindgut4 10 of 4 0.00Down
Heart9 01 of 4 0.01Down
Fat body16 30 of 4 0.02Down
Ovary47 34 of 4 0.00Down
Testis3907 2404 of 4 3.70Up
Male accessory glands9 40 of 4 0.00Down
Virgin spermatheca9 10 of 4 0.01Down
Mated spermatheca11 20 of 4 0.01Down
Adult carcass47 31 of 4 0.00Down
Larval CNS5 20 of 4 0.01Down
Larval Salivary gland201 54 of 4 0.19Down
Larval midgut8 20 of 4 0.01Down
Larval tubule15 20 of 4 0.00Down
Larval hindgut10 10 of 4 0.01Down
Larval fat body6 30 of 4 0.00Down
Larval trachea22 173 of 4 0.02Down
Larval carcass34 73 of 4 0.03Down
S2 cells (growing)16 20 of 4 0.02Down
Whole fly1046 224 of 4

Looking for FBgn0037889. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime