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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037896 through 18771 annotations produced 1 hits



ninaG (ninaG):

Annotation Number : CG6728
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037896
Gbrowse : chr3R:7245097-7247415 (-) // 100.0 //
Probeset : 1635148_at
Accessions : protein= NP_650070;, nucleotide= NM_141813;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : "0016491 // oxidoreductase activity // inferred from mutant phenotype /// 0016491 // oxidoreductase activity // inferred
FlyMine data for FBgn0037896.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 1.40Up
Head118 ± 34 of 4 8.70Up
Eye720 ± 1204 of 453.01Up
Thoracicoabdominal ganglion19 ± 14 of 4 1.40None
Salivary gland20 ± 00 of 4 1.53Up
Crop11 ± 01 of 4 0.80None
Midgut9 ± 20 of 4 0.70None
Tubule6 ± 10 of 4 0.50Down
Hindgut8 ± 11 of 4 0.70None
Heart2 ± 00 of 4 0.21Down
Fat body9 ± 40 of 4 0.70None
Ovary4 ± 10 of 4 0.30Down
Testis3 ± 10 of 4 0.30Down
Male accessory glands4 ± 20 of 4 0.40Down
Virgin spermatheca8 ± 20 of 4 0.60None
Mated spermatheca10 ± 00 of 4 0.73None
Adult carcass16 ± 33 of 4 1.20None
Larval CNS6 ± 13 of 4 0.45Down
Larval Salivary gland12 ± 00 of 4 0.94None
Larval midgut6 ± 10 of 4 0.51Down
Larval tubule9 ± 11 of 4 0.70None
Larval hindgut8 ± 21 of 4 0.63None
Larval fat body25 ± 34 of 4 1.90Up
Larval trachea10 ± 101 of 4 0.79None
Larval carcass6 ± 12 of 4 0.51Down
S2 cells (growing)8 ± 02 of 4 0.59None
Whole fly13 ± 24 of 4

Looking for FBgn0037896. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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